VTK-m  2.0
GoverningSaddleFinder.h
Go to the documentation of this file.
1 //============================================================================
2 // Copyright (c) Kitware, Inc.
3 // All rights reserved.
4 // See LICENSE.txt for details.
5 //
6 // This software is distributed WITHOUT ANY WARRANTY; without even
7 // the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
8 // PURPOSE. See the above copyright notice for more information.
9 //============================================================================
10 // Copyright (c) 2016, Los Alamos National Security, LLC
11 // All rights reserved.
12 //
13 // Copyright 2016. Los Alamos National Security, LLC.
14 // This software was produced under U.S. Government contract DE-AC52-06NA25396
15 // for Los Alamos National Laboratory (LANL), which is operated by
16 // Los Alamos National Security, LLC for the U.S. Department of Energy.
17 // The U.S. Government has rights to use, reproduce, and distribute this
18 // software. NEITHER THE GOVERNMENT NOR LOS ALAMOS NATIONAL SECURITY, LLC
19 // MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY FOR THE
20 // USE OF THIS SOFTWARE. If software is modified to produce derivative works,
21 // such modified software should be clearly marked, so as not to confuse it
22 // with the version available from LANL.
23 //
24 // Additionally, redistribution and use in source and binary forms, with or
25 // without modification, are permitted provided that the following conditions
26 // are met:
27 //
28 // 1. Redistributions of source code must retain the above copyright notice,
29 // this list of conditions and the following disclaimer.
30 // 2. Redistributions in binary form must reproduce the above copyright notice,
31 // this list of conditions and the following disclaimer in the documentation
32 // and/or other materials provided with the distribution.
33 // 3. Neither the name of Los Alamos National Security, LLC, Los Alamos
34 // National Laboratory, LANL, the U.S. Government, nor the names of its
35 // contributors may be used to endorse or promote products derived from
36 // this software without specific prior written permission.
37 //
38 // THIS SOFTWARE IS PROVIDED BY LOS ALAMOS NATIONAL SECURITY, LLC AND
39 // CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
40 // BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
41 // FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL LOS ALAMOS
42 // NATIONAL SECURITY, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
43 // INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
44 // BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
45 // USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
46 // THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
47 // (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
48 // THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
49 //============================================================================
50 
51 // This code is based on the algorithm presented in the paper:
52 // “Parallel Peak Pruning for Scalable SMP Contour Tree Computation.”
53 // Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
54 // Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
55 // (LDAV), October 2016, Baltimore, Maryland.
56 
57 //=======================================================================================
58 //
59 // COMMENTS:
60 //
61 // This functor replaces a parallel loop examining neighbours - again, for arbitrary
62 // meshes, it needs to be a reduction, but for regular meshes, it's faster this way.
63 //
64 // Any vector needed by the functor for lookup purposes will be passed as a parameter to
65 // the constructor and saved, with the actual function call being the operator ()
66 //
67 // Vectors marked I/O are intrinsically risky unless there is an algorithmic guarantee
68 // that the read/writes are completely independent - which for our case actually occurs
69 // The I/O vectors should therefore be justified in comments both here & in caller
70 //
71 //=======================================================================================
72 
73 #ifndef vtkm_worklet_contourtree_governing_saddle_finder_h
74 #define vtkm_worklet_contourtree_governing_saddle_finder_h
75 
77 
78 namespace vtkm
79 {
80 namespace worklet
81 {
82 namespace contourtree
83 {
84 
85 // Worklet for setting initial chain maximum value
87 {
88 public:
89  using ControlSignature = void(FieldIn edgeNo, // (input) index into sorted edges
90  WholeArrayIn edgeSorter, // (input) sorted edge index
91  WholeArrayIn edgeFar, // (input) high ends of edges
92  WholeArrayIn edgeNear, // (input) low ends of edges
93  WholeArrayOut prunesTo, // (output) where vertex is pruned to
94  WholeArrayOut outdegree); // (output) updegree of vertex
95  using ExecutionSignature = void(_1, _2, _3, _4, _5, _6);
96  using InputDomain = _1;
97 
98  // Constructor
101 
102  template <typename InFieldPortalType, typename OutFieldPortalType>
103  VTKM_EXEC void operator()(const vtkm::Id& edgeNo,
104  const InFieldPortalType& edgeSorter,
105  const InFieldPortalType& edgeFar,
106  const InFieldPortalType& edgeNear,
107  const OutFieldPortalType& prunesTo,
108  const OutFieldPortalType& outdegree) const
109  {
110  // default to true
111  bool isBestSaddleEdge = true;
112 
113  // retrieve the edge ID
114  vtkm::Id edge = edgeSorter.Get(edgeNo);
115 
116  // edge no. 0 is always best, so skip it
117  if (edgeNo != 0)
118  {
119  // retrieve the previous edge
120  vtkm::Id prevEdge = edgeSorter.Get(edgeNo - 1);
121  // if the previous edge has the same far end
122  if (edgeFar.Get(prevEdge) == edgeFar.Get(edge))
123  isBestSaddleEdge = false;
124  }
125 
126  if (isBestSaddleEdge)
127  { // found an extremum
128  // retrieve the near end as the saddle
129  vtkm::Id saddle = edgeNear.Get(edge);
130  // and the far end as the extremum
131  vtkm::Id extreme = edgeFar.Get(edge);
132 
133  // set the extremum to point to the saddle in the chainExtremum array
134  prunesTo.Set(extreme, saddle);
135 
136  // and set the outdegree to 0
137  outdegree.Set(extreme, 0);
138  } // found a extremum
139  } // operator()
140 
141 }; // GoverningSaddleFinder
142 }
143 }
144 }
145 
146 #endif
vtkm::worklet::contourtree::GoverningSaddleFinder::GoverningSaddleFinder
VTKM_EXEC_CONT GoverningSaddleFinder()
Definition: GoverningSaddleFinder.h:100
VTKM_EXEC
#define VTKM_EXEC
Definition: ExportMacros.h:51
vtkm
Groups connected points that have the same field value.
Definition: Atomic.h:19
WorkletMapField.h
VTKM_EXEC_CONT
#define VTKM_EXEC_CONT
Definition: ExportMacros.h:52
vtkm::worklet::contourtree::GoverningSaddleFinder::operator()
VTKM_EXEC void operator()(const vtkm::Id &edgeNo, const InFieldPortalType &edgeSorter, const InFieldPortalType &edgeFar, const InFieldPortalType &edgeNear, const OutFieldPortalType &prunesTo, const OutFieldPortalType &outdegree) const
Definition: GoverningSaddleFinder.h:103
vtkm::Id
vtkm::Int32 Id
Represents an ID (index into arrays).
Definition: Types.h:191
vtkm::worklet::contourtree::GoverningSaddleFinder::InputDomain
_1 InputDomain
Definition: GoverningSaddleFinder.h:96
vtkm::worklet::contourtree::GoverningSaddleFinder::ControlSignature
void(FieldIn edgeNo, WholeArrayIn edgeSorter, WholeArrayIn edgeFar, WholeArrayIn edgeNear, WholeArrayOut prunesTo, WholeArrayOut outdegree) ControlSignature
Definition: GoverningSaddleFinder.h:94
vtkm::worklet::WorkletMapField::FieldIn
A control signature tag for input fields.
Definition: WorkletMapField.h:49
vtkm::worklet::contourtree::GoverningSaddleFinder
Definition: GoverningSaddleFinder.h:86
vtkm::worklet::contourtree::GoverningSaddleFinder::ExecutionSignature
void(_1, _2, _3, _4, _5, _6) ExecutionSignature
Definition: GoverningSaddleFinder.h:95
vtkm::worklet::WorkletMapField
Base class for worklets that do a simple mapping of field arrays.
Definition: WorkletMapField.h:38