FindBoundaryTreeSuperarcsSuperarcToWorklet.h

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//  PURPOSE.  See the above copyright notice for more information.
//============================================================================
// Copyright (c) 2018, The Regents of the University of California, through
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
// from the U.S. Dept. of Energy).  All rights reserved.
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//     Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
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//=============================================================================
//
//  This code is an extension of the algorithm presented in the paper:
//  Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
//  Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
//  Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
//  (LDAV), October 2016, Baltimore, Maryland.
//
//  The PPP2 algorithm and software were jointly developed by
//  Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
//  Oliver Ruebel (LBNL)
//==============================================================================
 
#ifndef vtk_m_worklet_contourtree_distributed_bract_maker_find_boundary_tree_superacrs_superarc_to_worklet_h
#define vtk_m_worklet_contourtree_distributed_bract_maker_find_boundary_tree_superacrs_superarc_to_worklet_h
 
#include <vtkm/filter/scalar_topology/worklet/contourtree_augmented/Types.h>
#include <vtkm/worklet/WorkletMapField.h>
 
namespace vtkm
{
namespace worklet
{
namespace contourtree_distributed
{
namespace bract_maker
{
 
class FindBoundaryTreeSuperarcsSuperarcToWorklet : public vtkm::worklet::WorkletMapField
{
public:
  using ControlSignature = void(WholeArrayIn bractVertexSuperset,     // input
                                WholeArrayIn boundaryIndices,         // input
                                WholeArrayIn boundaryTreeId,          // input
                                WholeArrayIn contourtreeSuperparents, // input
                                WholeArrayIn contourtreeHyperparents, // input
                                WholeArrayIn contourtreeHyperarcs,    // input
                                WholeArrayIn contourtreeSupernodes,   // input
                                WholeArrayIn meshSortOrder,           // input
                                WholeArrayOut treeToSuperset,         // output
                                FieldOut bractSuperarcs               // output
  );
  using ExecutionSignature = _10(InputIndex, _1, _2, _3, _4, _5, _6, _7, _8, _9);
  using InputDomain = _1;
 
  // Default Constructor
  VTKM_EXEC_CONT
  FindBoundaryTreeSuperarcsSuperarcToWorklet() {}
 
  template <typename InFieldPortalType,
            typename MeshSortOrderPortalType,
            typename OutFieldPortalType>
  VTKM_EXEC vtkm::Id operator()(const vtkm::Id& from,
                                const InFieldPortalType& bractVertexSupersetPortal,
                                const InFieldPortalType& boundaryIndicesPortal,
                                const InFieldPortalType& boundaryTreeIdPortal,
                                const InFieldPortalType& contourtreeSuperparentsPortal,
                                const InFieldPortalType& contourtreeHyperparentsPortal,
                                const InFieldPortalType& contourtreeHyperarcsPortal,
                                const InFieldPortalType& contourtreeSupernodesPortal,
                                const MeshSortOrderPortalType& meshSortOrderPortal,
                                const OutFieldPortalType& treeToSupersetPortal) const
  {
    // find the sort order, super- and hyper- parent
    // vtkm::Id fromIndex = bractVertexSupersetPortal.Get(from);
    vtkm::Id fromSort = boundaryIndicesPortal.Get(from);
    vtkm::Id fromSuper = contourtreeSuperparentsPortal.Get(fromSort);
    vtkm::Id fromHyper = contourtreeHyperparentsPortal.Get(fromSuper);
 
    // also allocate space for the from, with index, &c.
    vtkm::Id to = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
    // vtkm::Id toIndex = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;  // set but not used
    vtkm::Id toSort = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
    vtkm::Id toSuper = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
    vtkm::Id toHyper = vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
 
    // for any vertex OTHER than the one at the RHE, set these variables
    if (from != bractVertexSupersetPortal.GetNumberOfValues() - 1)
    { // not RHE
      to = from + 1;
      // toIndex = bractVertexSupersetPortal.Get(to);  // set but not used
      toSort = boundaryIndicesPortal.Get(to);
      toSuper = contourtreeSuperparentsPortal.Get(toSort);
      toHyper = contourtreeHyperparentsPortal.Get(toSuper);
    } // not RHE
 
    // while we are here, we want to establish the mapping from the contour tree ID to the superset ID
    // so we test whether the node is a supernode, by seeing if it's sort ID matches its superparent
    // In the original code this was done last. We do this here first, because the values for
    // bractSuperarcs are set by return statements, so we don't reach the end of the function
    // and reordering the operation should be no problem.
    if (contourtreeSupernodesPortal.Get(fromSuper) == fromSort)
    { // supernode
      treeToSupersetPortal.Set(fromSuper, from);
    } // supernode
 
    // the easy case - there is a "hyper-neighbour" to link to
    if (fromHyper == toHyper)
    {            // hyperparents match
      return to; // same as bractSuperarcs.WritePortal().Set(from, to);
    }            // hyperparents match
    // the rest: we're at the RHE of a hyperarc and need to connect onwards
    else
    { // hyperparents do not match
      // retrieve the hypertarget
      vtkm::Id hyperTarget = contourtreeHyperarcsPortal.Get(fromHyper);
 
      // if it's non-existent, we're at the root, in which case our from vertex becomes the root
      if (vtkm::worklet::contourtree_augmented::NoSuchElement(hyperTarget))
      { // root vertex
        // same as bractSuperarcs.WritePortal().Set(from, NO_SUCH_ELEMENT)
        return vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
      } // root vertex
      // otherwise it points to a supernode
      else
      { // not root vertex
        // check whether the target will be in the BRACT
        vtkm::Id regularTargetId = meshSortOrderPortal.Get(contourtreeSupernodesPortal.Get(
          vtkm::worklet::contourtree_augmented::MaskedIndex(hyperTarget)));
        // now look up the ID in the BRACT
        vtkm::Id bract_id = boundaryTreeIdPortal.Get(regularTargetId);
 
        // if it is not in the tree, then this node becomes the root
        if (vtkm::worklet::contourtree_augmented::NoSuchElement(bract_id))
        {
          // same as bractSuperarcs.WritePortal().Set(from, NO_SUCH_ELEMENT)
          return vtkm::worklet::contourtree_augmented::NO_SUCH_ELEMENT;
        }
        // otherwise, we use the ID just retrieved
        else
        {
          // same as // same as bractSuperarcs.WritePortal().Set(from, bract_it)
          return bract_id;
        }
      } // not root vertex
    }   // hyperparents do not match
 
    // In serial this worklet implements the following operation
    /*
    for (indexType from = 0; from < bractVertexSuperset.size(); from++)
    { // per vertex in boundary tree
      // find the sort order, super- and hyper- parent
      indexType fromIndex = bractVertexSuperset[from], fromSort = boundaryIndices[from];
      indexType fromSuper = contourTree->superparents[fromSort], fromHyper = contourTree->hyperparents[fromSuper];
 
      // also allocate space for the from, with index, &c.
      indexType to = NO_SUCH_ELEMENT, toIndex = NO_SUCH_ELEMENT, toSort = NO_SUCH_ELEMENT;
      indexType toSuper = NO_SUCH_ELEMENT, toHyper = NO_SUCH_ELEMENT;
 
      // for any vertex OTHER than the one at the RHE, set these variables
      if (from != bractVertexSuperset.size() - 1)
        { // not RHE
        to = from + 1;
        toIndex = bractVertexSuperset[to];
        toSort = boundaryIndices[to];
        toSuper = contourTree->superparents[toSort];
        toHyper = contourTree->hyperparents[toSuper];
        } // not RHE
 
      // the easy case - there is a "hyper-neighbour" to link to
      if (fromHyper == toHyper)
        { // hyperparents match
        bract->superarcs[from] = to;
        } // hyperparents match
      else
      // the rest: we're at the RHE of a hyperarc and need to connect onwards
        { // hyperparents do not match
        // retrieve the hypertarget
        indexType hyperTarget = contourTree->hyperarcs[fromHyper];
 
        // if it's non-existent, we're at the root, in which case our from vertex becomes the root
        if (noSuchElement(hyperTarget))
          { // root vertex
          bract->superarcs[from] = NO_SUCH_ELEMENT;
          } // root vertex
        // otherwise it points to a supernode
        else
          { // not root vertex
          // check whether the target will be in the BRACT
          indexType regularTargetID = mesh->SortOrder(contourTree->supernodes[maskedIndex(hyperTarget)]);
 
          // now look up the ID in the BRACT
          indexType BRACTID = boundaryTreeID[regularTargetID];
 
          // if it is not in the tree, then this node becomes the root
          if (noSuchElement(BRACTID))
            bract->superarcs[from] = NO_SUCH_ELEMENT;
          // otherwise, we use the ID just retrieved
          else
            bract->superarcs[from] = BRACTID;
 
          } // not root vertex
 
        } // hyperparents do not match
 
      // while we are here, we want to establish the mapping from the contour tree ID to the superset ID
      // so we test whether the node is a supernode, by seeing if it's sort ID matches its superparent
      if (contourTree->supernodes[fromSuper] == fromSort)
        { // supernode
        tree2Superset[fromSuper] = from;
        } // supernode
    } // per vertex in boundary tree
    */
  } // operator()()
 
}; // FindBoundaryTreeSuperarcsSuperarcToWorklet
 
 
} // namespace bract_maker
} // namespace contourtree_distributed
} // namespace worklet
} // namespace vtkm
 
#endif